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<li class="toctree-l1"><a class="reference internal" href="../intro.html">Introduction to <code class="docutils literal notranslate"><span class="pre">quippy</span></code></a></li>
<li class="toctree-l1"><a class="reference internal" href="../install.html">Installation of QUIP and quippy</a></li>
<li class="toctree-l1 current"><a class="current reference internal" href="#">Tutorials</a><ul>
<li class="toctree-l2"><a class="reference internal" href="Introduction.html">Getting started with <code class="docutils literal notranslate"><span class="pre">Atoms</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="quippy-ase-interoperability.html">Interoperability with Atomic Simulation Environment</a></li>
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<li class="toctree-l2"><a class="reference internal" href="quippy-descriptor-tutorial.html">Using Quippy to compute descriptors of atomic environments</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html">Molecular Dynamics Simulation of Fracture in Quartz</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm.html">Adaptive QM/MM MD of Fracture in Silicon</a></li>
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<div class="section" id="tutorials">
<h1>Tutorials<a class="headerlink" href="#tutorials" title="Permalink to this headline">¶</a></h1>
<p>The following tutorials are currently available:</p>
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<ul>
<li class="toctree-l1"><a class="reference internal" href="Introduction.html">Getting started with <code class="docutils literal notranslate"><span class="pre">Atoms</span></code></a><ul>
<li class="toctree-l2"><a class="reference internal" href="Introduction.html#ASE-and-quippy">ASE and <code class="docutils literal notranslate"><span class="pre">quippy</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="Introduction.html#Changing-Atoms">Changing <code class="docutils literal notranslate"><span class="pre">Atoms</span></code></a></li>
<li class="toctree-l2"><a class="reference internal" href="Introduction.html#Generating-structures-from-scratch">Generating structures from scratch</a></li>
<li class="toctree-l2"><a class="reference internal" href="Introduction.html#Computing-the-energy">Computing the energy</a></li>
</ul>
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<li class="toctree-l1"><a class="reference internal" href="quippy-ase-interoperability.html">Interoperability with Atomic Simulation Environment</a><ul>
<li class="toctree-l2"><a class="reference internal" href="quippy-ase-interoperability.html#Example:-vacancy-formation-energy">Example: vacancy formation energy</a></li>
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<li class="toctree-l1"><a class="reference internal" href="tutorial.html">Introductory Tutorial</a><ul>
<li class="toctree-l2"><a class="reference internal" href="tutorial.html#getting-started">Getting Started</a></li>
<li class="toctree-l2"><a class="reference internal" href="tutorial.html#manipulating-atoms">Manipulating Atoms</a></li>
<li class="toctree-l2"><a class="reference internal" href="tutorial.html#using-an-atomslist-to-analyse-results">Using an AtomsList to analyse results</a></li>
<li class="toctree-l2"><a class="reference internal" href="tutorial.html#potentials-and-dynamicalsystems">Potentials and DynamicalSystems</a></li>
<li class="toctree-l2"><a class="reference internal" href="tutorial.html#structural-optimisation">Structural optimisation</a></li>
<li class="toctree-l2"><a class="reference internal" href="tutorial.html#bulk-modulus-calculations">Bulk Modulus Calculations</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="quippy-descriptor-tutorial.html">Using Quippy to compute descriptors of atomic environments</a><ul>
<li class="toctree-l2"><a class="reference internal" href="quippy-descriptor-tutorial.html#A-simple-descriptor:-pairwise-distances">A simple descriptor: pairwise distances</a></li>
<li class="toctree-l2"><a class="reference internal" href="quippy-descriptor-tutorial.html#A-many-body-descriptor:-SOAP">A many-body descriptor: SOAP</a></li>
<li class="toctree-l2"><a class="reference internal" href="quippy-descriptor-tutorial.html#General_monomer-example:-benzene">General_monomer example: benzene</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="adglass.html">Molecular Dynamics Simulation of Fracture in Quartz</a><ul>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#setting-up-your-working-environment">Setting up your working environment</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#starting-a-fracture-simulation">Starting a fracture simulation</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#quartz-primitive-unit-cell">Quartz Primitive Unit Cell</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#calculating-elastic-properties">Calculating Elastic Properties</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#changing-the-loading-of-the-fracture-system">Changing the loading of the fracture system</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#energy-release-rate-for-dynamic-fracture">Energy Release Rate for Dynamic Fracture</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#extension-tasks">Extension tasks</a></li>
<li class="toctree-l2"><a class="reference internal" href="adglass.html#input-files-and-solutions">Input files and Solutions</a></li>
</ul>
</li>
<li class="toctree-l1"><a class="reference internal" href="adaptive-qmmm.html">Adaptive QM/MM MD of Fracture in Silicon</a><ul>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-step0.html">Introduction</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-theory.html">Theoretical background</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-step1.html">Step 1: Setup of the Silicon model system</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-step2.html">Step 2: Classical MD simulation of fracture in Si</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-step3.html">Step 3: LOTF hybrid MD simulation of fracture in Si</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-solutions.html">Solutions</a></li>
<li class="toctree-l2"><a class="reference internal" href="adaptive-qmmm-references.html">References</a></li>
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